Fix documentation defects found by an adversarial review
Fifteen findings, all verified before acting. The ones that mattered: - Corrections added without updating what they corrected. §5's table still said a cap-less NURI is one "without :k:", two hundred lines after §4 established the discriminant is `r:`. Same shape of defect in the P1a report, which kept the sentence "it is the owner's keyring, upstream the keyring is the wallet" — the exact sentence §4quater declares wrong, and the one that produced a global in-memory keyring. - A wrong source citation: RootCapRefresh/BranchCapRefresh live in verifier/src/commits/mod.rs, not repo/src/commit.rs, and are no-op stubs. - Documentation describing deleted code: isolation.ts, discovery.readIndex, the global index, and an acceptance test that was dropped with discovery. - The P1a implementation report had aged into being wrong in four places (caps not persisted, inbox processing not started, plain string types, the :k: segment). It is dated, so it now carries a header saying what later lots overtook, rather than being rewritten. - vision.md stated "a document's data is stored encrypted" in the present tense. That is the target; here the cap value is the constant OK and nothing is encrypted. Said plainly now. - Prose left mangled by an earlier mechanical find-and-replace, in four places I had claimed were repaired. Also: reach.ts and connect.ts had no home in the permanent docs — the boundary and the connection sequence are now described in simulation.md, not only in a brief.
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@@ -8,6 +8,15 @@ The spec below is unchanged — read it first. Everything from here to *Why this
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# Implementation report (2026-07-28)
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> **Superseded in places by later lots — read with [`2026-07-30-virtual-wallet-boundary.md`](2026-07-30-virtual-wallet-boundary.md).** This report was accurate on 2026-07-28 and is kept as written; four of its statements have since been overtaken, and a fifth was wrong when written:
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> - *"ReadCaps are NOT persisted as caps anywhere. There is no key store"* — **no longer true.** Both durable registers are now emulated: `shim:readCap` on the store's Store branch (`AddRepo`) and `shim:link` on its User branch (`AddLink`). Caps are read back, not recomputed.
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> - *"Processing inboxes … Not started"* — **done** (`src/connect.ts`), at both levels, including per-document inboxes.
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> - *"`Nuri` and `ReadCap` are plain strings"* — **superseded the same week**: they are template literal types, so the confusion the runtime guard catches is now also a compile error. The *Typing* section below records the change; the earlier sentences were not rewritten.
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> - The `:k:` segment throughout — **a ReadCap is `r:`** (`BlockRef::readcap_nuri`, `engine/repo/src/types.rs:518-521`), reported by NextGraph's developer and verified. `:k:` belongs to objects, files and commits.
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> - *"That branch lists the store's documents… It is the owner's keyring. Upstream, the keyring is the wallet"* — **wrong when written**, and it is the sentence that produced a global in-memory "keyring". There is no keyring object; the wallet holds one root key per user. See [`../readcap-and-nuri-model.md`](../readcap-and-nuri-model.md) §4quater.
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## What landed
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| Spec | Where |
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